MLOC_65318 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.130414.729614.001115.7945
LEAShoots from the seedlings (10 cm shoot stage)7.050515.597256.587485.47695
INF1Young developing inflorescences (5mm)18.398819.480616.806116.1095
INF2Developing inflorescences (1-1.5 cm)18.292221.706518.311623.052
ROORoots from the seedlings (10 cm shoot stage)7.0514611.29039.718613.6698
NODDeveloping tillers at six leaf stage, 3rd internode7.673257.833516.432726.8268
CAR5Developing grain, bracts removed (5 DPA)14.976713.61816.318715.3661
CAR15Developing grain, bracts removed (15 DPA)4.879154.141534.1724310.7104



CDS Structure of MLOC_65318






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65318.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369107NoneNoneNoneNone
MLOC_65318.2CUST_5158_PI427708080AvailableAvailablecontig_50040 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g16400.2 +2 1e-162 479 264/436 (61%) 13106.m01810 protein helix-loop-helix DNA-binding domain containing protein, expressed
TAIR PP10 AT1G68920.2 +2 4e-62 217 147/356 (41%) basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=486