morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_65315

Gene IDMLOC_65315
Source Contig contig_500362

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_65315 FPKM values

FPKM by Treatment	FPKM by Replicate

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	7.11487	37.1745	27.8412	21.9557
LEA	Shoots from the seedlings (10 cm shoot stage)	30.8435	16.3279	12.4279	16.2357
INF1	Young developing inflorescences (5mm)	29.9457	23.8032	20.3883	18.3608
INF2	Developing inflorescences (1-1.5 cm)	29.8717	29.4581	28.5878	27.5241
ROO	Roots from the seedlings (10 cm shoot stage)	16.0804	23.5662	23.0678	23.507
NOD	Developing tillers at six leaf stage, 3rd internode	22.484	23.3174	9.77599	65.7397
CAR5	Developing grain, bracts removed (5 DPA)	45.1082	36.0072	42.2995	32.9636
CAR15	Developing grain, bracts removed (15 DPA)	13.407	13.3438	15.0233	25.5162

CDS Structure of MLOC_65315

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK364738

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK364738	CUST_24814_PI427708080	None	None	None
MLOC_10196.1	None	Available	None	contig_1558593 (Not mapped)
MLOC_1512.1	None	Available	None	contig_1134067 (Not mapped)
MLOC_16812.1	None	Available	None	contig_1574562 (Mapped)
MLOC_24961.1	None	Available	None	contig_1663475 (Not mapped)
MLOC_28196.1	None	Available	None	contig_1899359 (Not mapped)
MLOC_30444.1	None	Available	None	contig_2097479 (Mapped)
MLOC_30790.1	None	Available	None	contig_212689 (Mapped)
MLOC_31910.1	None	Available	None	contig_2233947 (Not mapped)
MLOC_32807.1	None	Available	None	contig_23213 (Not mapped)
MLOC_35009.1	None	Available	None	contig_24528 (Not mapped)
MLOC_48632.1	None	Available	None	contig_327062 (Mapped)
MLOC_53403.1	None	Available	None	contig_383308 (Not mapped)
MLOC_65315.1	None	Available	Available	contig_500362 (Mapped)
MLOC_79615.1	None	Available	None	contig_85997 (Mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-