MLOC_65280 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains51.278821.753647.145645.926
LEAShoots from the seedlings (10 cm shoot stage)19.637.896818.3241312.812
INF1Young developing inflorescences (5mm)42.278334.288858.133351.5798
INF2Developing inflorescences (1-1.5 cm)27.55729.075344.650348.1017
ROORoots from the seedlings (10 cm shoot stage)41.160412.815939.613133.2284
NODDeveloping tillers at six leaf stage, 3rd internode5.432553.8681912.436125.2147
CAR5Developing grain, bracts removed (5 DPA)25.13720.810613.628925.5504
CAR15Developing grain, bracts removed (15 DPA)4.738936.7576510.737623.3006



CDS Structure of MLOC_65280






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65280.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65280.1CUST_8815_PI427708083AvailableAvailablecontig_49999 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54470.2 +1 2e-25 93 39/50 (78%) 13102.m06237 protein 60S ribosomal protein L35a-3, putative, expressed
TAIR PP10 AT1G74270.1 +1 6e-25 91 39/50 (78%) Ribosomal protein L35Ae family protein | chr1:27928415-27929466 REVERSE LENGTH=112