MLOC_6528 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.835621.395141.745831.28126
LEAShoots from the seedlings (10 cm shoot stage)1.440711.589873.064281.30543
INF1Young developing inflorescences (5mm)1.429061.602221.776981.02193
INF2Developing inflorescences (1-1.5 cm)1.573121.658721.770251.39546
ROORoots from the seedlings (10 cm shoot stage)2.777093.303642.148822.72738
NODDeveloping tillers at six leaf stage, 3rd internode1.396531.867152.720774.86965
CAR5Developing grain, bracts removed (5 DPA)2.040342.056351.841131.43071
CAR15Developing grain, bracts removed (15 DPA)1.505451.502951.638542.67091



CDS Structure of MLOC_6528






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6528.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6528.1NoneAvailableAvailablecontig_137680 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g15790.1 +1 1e-83 273 137/144 (95%) 13109.m01498 protein ras-related protein, putative, expressed
TAIR PP10 AT5G60860.1 +1 3e-80 263 131/144 (91%) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217