MLOC_65279 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.374832.995353.092422.78677
LEAShoots from the seedlings (10 cm shoot stage)2.298431.112810.8985211.2419
INF1Young developing inflorescences (5mm)9.262810.307911.69418.23736
INF2Developing inflorescences (1-1.5 cm)19.198918.76317.028419.5466
ROORoots from the seedlings (10 cm shoot stage)1.118243.005253.089593.13162
NODDeveloping tillers at six leaf stage, 3rd internode0.2792650.5468090.9347072.00811
CAR5Developing grain, bracts removed (5 DPA)4.577325.600825.040244.7163
CAR15Developing grain, bracts removed (15 DPA)1.047570.7827231.012872.08117



CDS Structure of MLOC_65279






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65279.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65279.7CUST_14808_PI427708080AvailableAvailablecontig_49997 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g56950.1 -3 4e-173 511 257/401 (64%) 13102.m06548 protein expressed protein
TAIR PP10 AT5G44010.1 -3 9e-58 202 129/390 (33%) unknown protein; Has 28 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:17707224-17709199 REVERSE LENGTH=357