MLOC_65275 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.600717.747416.706514.7633
LEAShoots from the seedlings (10 cm shoot stage)18.877613.569616.625813.23
INF1Young developing inflorescences (5mm)35.690440.17437.128529.8809
INF2Developing inflorescences (1-1.5 cm)39.58342.811839.880642.2672
ROORoots from the seedlings (10 cm shoot stage)18.74618.863616.36320.6198
NODDeveloping tillers at six leaf stage, 3rd internode7.1288710.796810.348233.7066
CAR5Developing grain, bracts removed (5 DPA)27.819227.404629.606625.1925
CAR15Developing grain, bracts removed (15 DPA)14.172915.036512.963531.0975



CDS Structure of MLOC_65275






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65275.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373475NoneNoneNoneNone
MLOC_65275.1CUST_5146_PI427708080AvailableAvailablecontig_49995 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g06890.1 +3 0.0 821 474/691 (69%) 13112.m00713 protein OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed
TAIR PP10 AT1G10390.2 +3 2e-160 506 340/757 (45%) Nucleoporin autopeptidase | chr1:3407265-3412045 REVERSE LENGTH=1041