MLOC_65243 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.690158.888887.9506811.0908
LEAShoots from the seedlings (10 cm shoot stage)5.432384.640766.594055.46987
INF1Young developing inflorescences (5mm)20.880723.636427.718123.6608
INF2Developing inflorescences (1-1.5 cm)29.468824.348125.266533.0048
ROORoots from the seedlings (10 cm shoot stage)11.910310.216510.98916.1037
NODDeveloping tillers at six leaf stage, 3rd internode2.526325.2739610.656322.2922
CAR5Developing grain, bracts removed (5 DPA)6.778547.290866.214067.89753
CAR15Developing grain, bracts removed (15 DPA)2.770553.177912.873548.11459



CDS Structure of MLOC_65243






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65243.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364284NoneNoneNoneNone
MLOC_65243.1CUST_5136_PI427708080AvailableAvailablecontig_49948 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g36480.2 +3 1e-135 402 203/300 (68%) 13111.m09241 protein zinc knuckle domain containing protein, expressed
TAIR PP10 AT3G43590.1 +3 4e-71 241 135/344 (39%) zinc knuckle (CCHC-type) family protein | chr3:15509753-15512255 FORWARD LENGTH=551