MLOC_65215 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains616.175439.785429.839481.719
LEAShoots from the seedlings (10 cm shoot stage)216.612116.933151.566133.696
INF1Young developing inflorescences (5mm)704.732725.898772.97597.025
INF2Developing inflorescences (1-1.5 cm)495.708453.531535.123525.932
ROORoots from the seedlings (10 cm shoot stage)381.615338.154417.469408.899
NODDeveloping tillers at six leaf stage, 3rd internode41.395537.365978.0139126.779
CAR5Developing grain, bracts removed (5 DPA)317.744332.654310.389309.302
CAR15Developing grain, bracts removed (15 DPA)170.054147.674128.349344.376



CDS Structure of MLOC_65215






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65215.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363402NoneNoneNoneNone
MLOC_65215.1CUST_5129_PI427708080AvailableAvailablecontig_49910 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g52361.1 +1 1e-95 287 134/145 (92%) 13104.m05364 protein ribosomal protein S17, putative, expressed
TAIR PP10 AT3G48930.1 +1 2e-92 278 127/145 (88%) | Symbols: EMB1080 | Nucleic acid-binding, OB-fold-like protein | chr3:18141017-18142189 REVERSE LENGTH=160