MLOC_65183 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.01448.762247.605628.0918
LEAShoots from the seedlings (10 cm shoot stage)3.038010.2174890.65761.04824
INF1Young developing inflorescences (5mm)14.014810.613610.280610.0273
INF2Developing inflorescences (1-1.5 cm)8.8460311.690612.889412.2361
ROORoots from the seedlings (10 cm shoot stage)3.72365.00035.023044.70395
NODDeveloping tillers at six leaf stage, 3rd internode0.2314560.1711650.1730090.441695
CAR5Developing grain, bracts removed (5 DPA)5.058984.174843.366894.19195
CAR15Developing grain, bracts removed (15 DPA)0.2356480.1867460.564820.76327



CDS Structure of MLOC_65183






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65183.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376531NoneNoneNoneNone
MLOC_65183.1CUST_5124_PI427708080AvailableAvailablecontig_49866 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17100.1 -3 2e-50 169 108/131 (82%) 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G02560.1 -3 3e-45 155 96/122 (79%) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153