MLOC_65169 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.650540.328134.107835.3906
LEAShoots from the seedlings (10 cm shoot stage)35.781638.06732.640132.4497
INF1Young developing inflorescences (5mm)70.04276.132974.255563.3523
INF2Developing inflorescences (1-1.5 cm)111.058106.84496.0464120.841
ROORoots from the seedlings (10 cm shoot stage)18.584637.057825.852444.9034
NODDeveloping tillers at six leaf stage, 3rd internode18.420824.760729.731790.0099
CAR5Developing grain, bracts removed (5 DPA)60.475753.696957.784258.7424
CAR15Developing grain, bracts removed (15 DPA)37.662735.577134.976785.2595



CDS Structure of MLOC_65169






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65169.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376831NoneNoneNoneNone
MLOC_65169.1CUST_5120_PI427708080AvailableAvailablecontig_49842 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01020.2 +3 0.0 1565 914/1290 (71%) 13105.m00008 protein transcriptional repressor, putative, expressed
TAIR PP10 AT3G01320.1 +3 0.0 984 629/1397 (45%) | Symbols: SNL1 | SIN3-like 1 | chr3:106730-113197 FORWARD LENGTH=1372