MLOC_65139 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains409.982340.788321.578483.971
LEAShoots from the seedlings (10 cm shoot stage)150.38375.719686.1019105.834
INF1Young developing inflorescences (5mm)339.672346.971345.077389.266
INF2Developing inflorescences (1-1.5 cm)239.328244.894240.014344.59
ROORoots from the seedlings (10 cm shoot stage)262.309227.762283.845416.108
NODDeveloping tillers at six leaf stage, 3rd internode20.820314.633628.980673.1237
CAR5Developing grain, bracts removed (5 DPA)133.653145.335135.71182.144
CAR15Developing grain, bracts removed (15 DPA)36.445939.708333.2993112.989



CDS Structure of MLOC_65139






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65139.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353933NoneNoneNoneNone
MLOC_65139.1CUST_5116_PI427708080AvailableAvailablecontig_49806 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g39500.1 -1 1e-60 189 109/120 (91%) 13108.m04216 protein 60S ribosomal protein L31, putative, expressed
TAIR PP10 AT5G56710.1 -1 2e-51 165 91/120 (76%) Ribosomal protein L31e family protein | chr5:22944003-22944767 REVERSE LENGTH=119