MLOC_65093 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.107411.910341.567161.59989
LEAShoots from the seedlings (10 cm shoot stage)2.368212.248721.795281.83318
INF1Young developing inflorescences (5mm)2.334682.364092.674341.98696
INF2Developing inflorescences (1-1.5 cm)2.029692.243042.214592.28302
ROORoots from the seedlings (10 cm shoot stage)0.3674441.212231.361161.31706
NODDeveloping tillers at six leaf stage, 3rd internode4.797235.308225.9376918.0131
CAR5Developing grain, bracts removed (5 DPA)2.16272.016332.216471.97595
CAR15Developing grain, bracts removed (15 DPA)0.6035820.5185620.4624581.22093



CDS Structure of MLOC_65093






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65093.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65093.1CUST_14789_PI427708080AvailableAvailablecontig_49743 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g39410.1 -2 0.0 1451 731/954 (77%) 13104.m03816 protein pentatricopeptide, putative, expressed
TAIR PP10 AT3G63370.1 -2 0.0 715 363/798 (45%) | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:23402080-23405180 FORWARD LENGTH=884