MLOC_65073 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.82179.211139.3419110.677
LEAShoots from the seedlings (10 cm shoot stage)10.07145.952510.38228.36327
INF1Young developing inflorescences (5mm)20.92819.116119.456317.6593
INF2Developing inflorescences (1-1.5 cm)13.553815.610714.802917.0195
ROORoots from the seedlings (10 cm shoot stage)10.708111.918311.858215.9696
NODDeveloping tillers at six leaf stage, 3rd internode1.950891.722314.694628.33668
CAR5Developing grain, bracts removed (5 DPA)12.74615.711916.194215.4308
CAR15Developing grain, bracts removed (15 DPA)10.47357.159517.5795720.277



CDS Structure of MLOC_65073






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65073.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375637NoneNoneNoneNone
MLOC_65073.1CUST_5103_PI427708080AvailableAvailablecontig_49711 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g30510.1 +2 9e-71 219 103/135 (76%) 13112.m03108 protein DNA-directed RNA polymerase III subunit RPC9, putative, expressed
TAIR PP10 AT5G62950.3 +2 2e-27 105 58/132 (44%) RNA polymerase II, Rpb4, core protein | chr5:25262355-25263033 REVERSE LENGTH=139