MLOC_65067 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.596132.392131.477631.0743
LEAShoots from the seedlings (10 cm shoot stage)167.892366.108386.994255.213
INF1Young developing inflorescences (5mm)22.880519.761921.027817.6702
INF2Developing inflorescences (1-1.5 cm)23.117222.996526.46926.4078
ROORoots from the seedlings (10 cm shoot stage)18.272126.198227.398730.472
NODDeveloping tillers at six leaf stage, 3rd internode82.88975.374892.9801261.292
CAR5Developing grain, bracts removed (5 DPA)56.025758.164953.531856.2638
CAR15Developing grain, bracts removed (15 DPA)24.916528.954726.185962.5819



CDS Structure of MLOC_65067






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65067.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354144NoneNoneNoneNone
MLOC_65067.1CUST_5102_PI427708080AvailableAvailablecontig_49702 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g37250.1 -2 5e-147 427 249/287 (87%) 13107.m03832 protein THYLAKOID FORMATION1, chloroplast precursor, putative, expressed
TAIR PP10 AT2G20890.1 -2 7e-105 319 192/286 (67%) | Symbols: PSB29, THF1 | photosystem II reaction center PSB29 protein | chr2:8987783-8989185 FORWARD LENGTH=300