MLOC_65057 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.582552.854850.425848.6018
LEAShoots from the seedlings (10 cm shoot stage)59.90773.680464.471856.0436
INF1Young developing inflorescences (5mm)44.223341.329647.811836.2762
INF2Developing inflorescences (1-1.5 cm)42.900547.398151.012450.4338
ROORoots from the seedlings (10 cm shoot stage)46.946769.896170.385779.852
NODDeveloping tillers at six leaf stage, 3rd internode68.777166.021261.655218.017
CAR5Developing grain, bracts removed (5 DPA)55.525967.162861.270559.5545
CAR15Developing grain, bracts removed (15 DPA)14.659212.939614.353731.2675



CDS Structure of MLOC_65057






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65057.18
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250842.1NoneNoneNoneNone
AK251186.1NoneNoneNoneNone
AK354364NoneNoneNoneNone
MLOC_65057.18CUST_5100_PI427708080AvailableAvailablecontig_49690 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g27520.1 +2 0.0 770 378/424 (89%) 13112.m02797 protein serine/threonine-protein kinase AFC2, putative, expressed
TAIR PP10 AT4G24740.1 +2 0.0 625 299/425 (70%) | Symbols: AFC2, AME1, FC2 | FUS3-complementing gene 2 | chr4:12754729-12757653 REVERSE LENGTH=427