MLOC_65054 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04477830.1467910.1247760.137847
LEAShoots from the seedlings (10 cm shoot stage)0.05830510.2354800.140705
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.015520500.01934680.0328548
ROORoots from the seedlings (10 cm shoot stage)0.08390150.1144970.1525750.14681
NODDeveloping tillers at six leaf stage, 3rd internode0.09097370.066218200.208737
CAR5Developing grain, bracts removed (5 DPA)3.845992.982223.018043.52474
CAR15Developing grain, bracts removed (15 DPA)39.255936.091933.115795.4652



CDS Structure of MLOC_65054






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65054.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65054.1CUST_12965_PI427708083AvailableAvailablecontig_49686 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48229.1 +1 7e-36 145 68/78 (87%) 13107.m05155 protein vacuolar-sorting receptor precursor, putative, expressed
TAIR PP10 AT2G30290.1 +1 1e-28 122 55/78 (71%) | Symbols: VSR2, VSR1;2, BP80-1;2, AtVSR2 | VACUOLAR SORTING RECEPTOR 2 | chr2:12912890-12915781 REVERSE LENGTH=625