MLOC_65048 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains234.396225.234210.308254.484
LEAShoots from the seedlings (10 cm shoot stage)153.463116.949119.63123.519
INF1Young developing inflorescences (5mm)359.474343.127330.674328.632
INF2Developing inflorescences (1-1.5 cm)219.631244.138252.646288.858
ROORoots from the seedlings (10 cm shoot stage)150.929224.926326.899306.103
NODDeveloping tillers at six leaf stage, 3rd internode34.465616.732339.505479.1755
CAR5Developing grain, bracts removed (5 DPA)131.909144.428122.614144.457
CAR15Developing grain, bracts removed (15 DPA)33.503735.028526.471983.263



CDS Structure of MLOC_65048






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65048.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361625NoneNoneNoneNone
MLOC_65048.1CUST_5098_PI427708080AvailableAvailablecontig_49674 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g38520.4 +3 3e-63 194 98/102 (96%) 13105.m10387 protein 60S ribosomal protein L36-2, putative, expressed
TAIR PP10 AT3G53740.4 +3 4e-53 168 84/102 (82%) Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112