MLOC_65040 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.701813.956616.406514.7555
LEAShoots from the seedlings (10 cm shoot stage)30.79399.1950715.714814.1313
INF1Young developing inflorescences (5mm)0.7673270.7257880.5416480.605334
INF2Developing inflorescences (1-1.5 cm)1.692911.456121.555971.76138
ROORoots from the seedlings (10 cm shoot stage)10.340616.00712.055914.9101
NODDeveloping tillers at six leaf stage, 3rd internode95.4291151.359127.876331.916
CAR5Developing grain, bracts removed (5 DPA)3.576391.855152.371342.53702
CAR15Developing grain, bracts removed (15 DPA)0.01766860.06292240.07591550.146064



CDS Structure of MLOC_65040






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65040.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65040.1CUST_14780_PI427708080AvailableAvailablecontig_49664 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g02780.1 +3 7e-157 466 268/484 (55%) 13106.m00210 protein aspartic protease, putative, expressed
TAIR PP10 AT5G10770.1 +3 2e-62 217 166/471 (35%) Eukaryotic aspartyl protease family protein | chr5:3403331-3405331 REVERSE LENGTH=474