MLOC_65017 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.060924.922729.653529.9094
LEAShoots from the seedlings (10 cm shoot stage)12.82844.638747.724297.61874
INF1Young developing inflorescences (5mm)28.784923.772722.606921.9878
INF2Developing inflorescences (1-1.5 cm)9.117169.126629.3212910.3142
ROORoots from the seedlings (10 cm shoot stage)18.044820.706932.873128.3058
NODDeveloping tillers at six leaf stage, 3rd internode1.376740.7166321.099342.63186
CAR5Developing grain, bracts removed (5 DPA)21.696622.902220.924522.3932
CAR15Developing grain, bracts removed (15 DPA)2.932223.269882.068346.6841



CDS Structure of MLOC_65017






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65017.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358489NoneNoneNoneNone
MLOC_65017.2CUST_5094_PI427708080AvailableAvailablecontig_49637 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g42380.1 -3 9e-103 303 145/159 (91%) 13104.m04179 protein ribosomal protein S17, putative, expressed
TAIR PP10 AT3G48930.1 -3 7e-97 287 135/161 (84%) | Symbols: EMB1080 | Nucleic acid-binding, OB-fold-like protein | chr3:18141017-18142189 REVERSE LENGTH=160