MLOC_65005 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.249989.695358.062316.40708
LEAShoots from the seedlings (10 cm shoot stage)8.4882410.40388.32116.83986
INF1Young developing inflorescences (5mm)17.717817.156618.663712.6397
INF2Developing inflorescences (1-1.5 cm)24.545424.398824.752422.6817
ROORoots from the seedlings (10 cm shoot stage)5.727459.496828.232459.19596
NODDeveloping tillers at six leaf stage, 3rd internode5.342857.189966.8822723.296
CAR5Developing grain, bracts removed (5 DPA)16.110715.50315.44812.5983
CAR15Developing grain, bracts removed (15 DPA)9.942079.566338.6863617.947



CDS Structure of MLOC_65005






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65005.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365945NoneNoneNoneNone
MLOC_65005.2CUST_5092_PI427708080AvailableAvailablecontig_49618 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g22700.1 +2 2e-89 281 201/346 (58%) 13106.m02441 protein zinc finger family protein, putative, expressed
TAIR PP10 AT4G28990.1 +2 5e-15 77 58/166 (35%) RNA-binding protein-related | chr4:14291205-14293018 FORWARD LENGTH=347