MLOC_64939 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains355.596261.661256.257261.378
LEAShoots from the seedlings (10 cm shoot stage)111.64830.802139.815847.4172
INF1Young developing inflorescences (5mm)452.446458.119410.259374.342
INF2Developing inflorescences (1-1.5 cm)255.24324.289305.42323.634
ROORoots from the seedlings (10 cm shoot stage)217.983215.336213.516217.296
NODDeveloping tillers at six leaf stage, 3rd internode89.509682.811967.8559198.031
CAR5Developing grain, bracts removed (5 DPA)234.088260.871230.058234.195
CAR15Developing grain, bracts removed (15 DPA)24.92523.58924.81158.0844



CDS Structure of MLOC_64939






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64939.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248540.1NoneNoneNoneNone
MLOC_64939.2CUST_5075_PI427708080AvailableAvailablecontig_49536 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g36130.1 -3 2e-53 175 118/119 (99%) 13107.m03705 protein core histone H2A/H2B/H3/H4, putative, expressed
TAIR PP10 AT5G54640.1 -3 3e-44 150 97/103 (94%) | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily protein | chr5:22196540-22197279 FORWARD LENGTH=130