MLOC_64861 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.624110.09899.6147111.1279
LEAShoots from the seedlings (10 cm shoot stage)3.287772.790773.071492.70278
INF1Young developing inflorescences (5mm)4.946076.715835.713435.38417
INF2Developing inflorescences (1-1.5 cm)5.048675.375294.428186.00385
ROORoots from the seedlings (10 cm shoot stage)8.493315.986427.323398.14654
NODDeveloping tillers at six leaf stage, 3rd internode4.010243.449822.571489.89094
CAR5Developing grain, bracts removed (5 DPA)6.544117.362497.256987.72061
CAR15Developing grain, bracts removed (15 DPA)2.487672.019691.912425.58963



CDS Structure of MLOC_64861






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64861.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374986NoneNoneNoneNone
MLOC_64861.2CUST_5059_PI427708080AvailableAvailablecontig_49422 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g08410.1 -1 2e-81 258 164/250 (66%) 13105.m00924 protein ATP10 protein, expressed
TAIR PP10 AT1G08220.1 -1 7e-54 185 123/245 (50%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast hits to 168 proteins in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | chr1:2581574-2583288 REVERSE LENGTH=274