MLOC_64860 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains65.440540.091343.848844.2479
LEAShoots from the seedlings (10 cm shoot stage)13.73710.037713.49359.25572
INF1Young developing inflorescences (5mm)20.182524.643122.179318.1901
INF2Developing inflorescences (1-1.5 cm)11.598714.196412.441813.4706
ROORoots from the seedlings (10 cm shoot stage)55.325536.435543.485641.1762
NODDeveloping tillers at six leaf stage, 3rd internode31.660918.273510.456241.0032
CAR5Developing grain, bracts removed (5 DPA)22.078623.892123.814821.605
CAR15Developing grain, bracts removed (15 DPA)7.891178.055937.9610218.5852



CDS Structure of MLOC_64860






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64860.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374022NoneNoneNoneNone
MLOC_64860.1CUST_5058_PI427708080AvailableAvailablecontig_49422 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g08414.1 +1 3e-29 112 53/55 (96%) 13105.m00927 protein expressed protein
TAIR PP10 AT1G68680.1 +1 2e-17 79 36/55 (65%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; Has 20 Blast hits to 20 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25785627-25786622 FORWARD LENGTH=75