MLOC_64828 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0373090.03251130.08094810.0573303
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.4448590.1662220.2373020.199912
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)9.908627.972035.694267.91786
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_64828






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64828.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_64828.1CUST_14748_PI427708080AvailableAvailablecontig_49372 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g08330.1 +3 1e-145 432 267/464 (58%) 13101.m00870 protein aspartic proteinase nepenthesin-1 precursor, putative
TAIR PP10 AT1G64830.1 +3 5e-65 221 158/444 (36%) Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431