MLOC_64825 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2916030.0726020.1425980.115459
LEAShoots from the seedlings (10 cm shoot stage)0.2210660.4265410.2657370.144032
INF1Young developing inflorescences (5mm)0.1161280.313840.171060.114663
INF2Developing inflorescences (1-1.5 cm)00.04188880.2127320.0547828
ROORoots from the seedlings (10 cm shoot stage)00.3105160.2757730.196836
NODDeveloping tillers at six leaf stage, 3rd internode00.05423810.3653790.321365
CAR5Developing grain, bracts removed (5 DPA)0.3412150.2084020.2483970.170435
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_64825






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64825.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_64825.2NoneAvailableAvailablecontig_49370 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g08500.1 +3 1e-57 160 80/149 (54%) 13101.m00890 protein transposon protein, putative, Pong sub-class
TAIR PP10 AT2G13770.1 +3 5e-23 100 48/99 (48%) CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343