MLOC_64799 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.36519.257618.669620.8276
LEAShoots from the seedlings (10 cm shoot stage)30.799430.153430.224926.4316
INF1Young developing inflorescences (5mm)15.043513.520314.196112.9942
INF2Developing inflorescences (1-1.5 cm)15.574415.583815.57618.3463
ROORoots from the seedlings (10 cm shoot stage)13.744212.904813.386116.5812
NODDeveloping tillers at six leaf stage, 3rd internode26.656832.32827.984100.881
CAR5Developing grain, bracts removed (5 DPA)17.263715.568718.082217.8801
CAR15Developing grain, bracts removed (15 DPA)6.572977.056716.7347417.2365



CDS Structure of MLOC_64799






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64799.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371854NoneNoneNoneNone
MLOC_64799.1CUST_5045_PI427708080AvailableAvailablecontig_49331 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g05900.1 +1 0.0 579 308/386 (80%) 13112.m00599 protein rhoGAP domain containing protein, expressed
TAIR PP10 AT5G22400.1 +1 5e-126 389 209/396 (53%) Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr5:7423050-7425335 REVERSE LENGTH=466