MLOC_64679 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains230.969235.132286.1520
LEAShoots from the seedlings (10 cm shoot stage)9483.7825541.9286350
INF1Young developing inflorescences (5mm)98.96288.7102.1720
INF2Developing inflorescences (1-1.5 cm)80.795267.031199.99410
ROORoots from the seedlings (10 cm shoot stage)15.468714.516461.38590
NODDeveloping tillers at six leaf stage, 3rd internode5724.564912.796164.970
CAR5Developing grain, bracts removed (5 DPA)1515.971838.531662.520
CAR15Developing grain, bracts removed (15 DPA)203.965281.59237.8930



CDS Structure of MLOC_64679






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64679.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250140.1NoneNoneNoneNone
MLOC_64679.1CUST_5017_PI427708080AvailableNonecontig_49178 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g19470.2 +1 3e-108 317 146/173 (84%) 13112.m02066 protein ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
TAIR PP10 AT1G67090.1 +1 3e-79 242 113/173 (65%) | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180