MLOC_6467 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains95.058672.63668.3219102.762
LEAShoots from the seedlings (10 cm shoot stage)47.74689.4400912.25724.1885
INF1Young developing inflorescences (5mm)144.661125.451125.268158.677
INF2Developing inflorescences (1-1.5 cm)104.712170.224127.574229.09
ROORoots from the seedlings (10 cm shoot stage)28.699143.304344.165374.4373
NODDeveloping tillers at six leaf stage, 3rd internode2.761763.558921.6461222.3737
CAR5Developing grain, bracts removed (5 DPA)109.63116.485103.159153.313
CAR15Developing grain, bracts removed (15 DPA)9.524358.430497.7293937.0074



CDS Structure of MLOC_6467






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6467.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6467.1CUST_12957_PI427708083AvailableAvailablecontig_137594 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05900.1 -1 1e-31 114 57/57 (100%) 13101.m00576 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
TAIR PP10 AT5G22880.1 -1 5e-31 111 55/57 (96%) | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-7652567 REVERSE LENGTH=145