MLOC_64632 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.470496.60017.554677.64883
LEAShoots from the seedlings (10 cm shoot stage)3.190132.385844.215222.89534
INF1Young developing inflorescences (5mm)4.520714.790825.169624.1095
INF2Developing inflorescences (1-1.5 cm)4.386354.235024.980494.93561
ROORoots from the seedlings (10 cm shoot stage)5.346855.197335.68626.67622
NODDeveloping tillers at six leaf stage, 3rd internode3.574224.635084.3179415.3795
CAR5Developing grain, bracts removed (5 DPA)5.95516.637495.734246.17769
CAR15Developing grain, bracts removed (15 DPA)3.548342.763222.528517.20511



CDS Structure of MLOC_64632






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64632.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_64632.1CUST_14723_PI427708080AvailableAvailablecontig_49116 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g29220.1 +2 3e-37 140 118/183 (64%) 13102.m03184 protein expressed protein
TAIR PP10 AT4G17010.1 +2 2e-19 87 55/96 (57%) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9576442-9577627 FORWARD LENGTH=160