MLOC_64588 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.582849.513940.785947.8641
LEAShoots from the seedlings (10 cm shoot stage)18.48921.829061.533256.54018
INF1Young developing inflorescences (5mm)247.702264.478273.316233.723
INF2Developing inflorescences (1-1.5 cm)244.968274.432212.875297.812
ROORoots from the seedlings (10 cm shoot stage)10.080431.242527.776738.1251
NODDeveloping tillers at six leaf stage, 3rd internode0.252240.4191460.196531.33103
CAR5Developing grain, bracts removed (5 DPA)28.488330.466628.335231.6748
CAR15Developing grain, bracts removed (15 DPA)5.840233.293015.6033811.8106



CDS Structure of MLOC_64588






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64588.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368333NoneNoneNoneNone
MLOC_64588.1CUST_4999_PI427708080AvailableAvailablecontig_49033 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g51230.2 -1 0.0 1136 590/792 (74%) 13103.m05570 protein SNF2 family N-terminal domain containing protein, expressed
TAIR PP10 AT5G66750.1 -1 0.0 910 480/763 (63%) | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | chromatin remodeling 1 | chr5:26649050-26652869 FORWARD LENGTH=764