MLOC_64577 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06898580.1082840.1149340.0868345
LEAShoots from the seedlings (10 cm shoot stage)0.05507950.02823710.02454570.0285476
INF1Young developing inflorescences (5mm)0.2073720.2505510.1512890.156876
INF2Developing inflorescences (1-1.5 cm)0.1991210.2663460.1792230.220081
ROORoots from the seedlings (10 cm shoot stage)00.03424480.1046950.034212
NODDeveloping tillers at six leaf stage, 3rd internode0.0136380.008519730.01409690.0262724
CAR5Developing grain, bracts removed (5 DPA)0.1428320.114470.1380740.112461
CAR15Developing grain, bracts removed (15 DPA)0.06659880.08524530.0982960.163435



CDS Structure of MLOC_64577






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64577.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_64577.1NoneAvailableAvailablecontig_49014 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g37170.1 +3 4e-26 100 54/150 (36%) 13110.m03370 protein retrotransposon protein, putative, unclassified
TAIR PP10 ATMG00310.1 +3 7e-15 76 39/140 (28%) | Symbols: ORF154 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chrM:90883-91347 REVERSE LENGTH=154