MLOC_6452 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.87417.013214.232815.6632
LEAShoots from the seedlings (10 cm shoot stage)12.05267.008538.589927.79847
INF1Young developing inflorescences (5mm)17.114116.105816.608112.8129
INF2Developing inflorescences (1-1.5 cm)14.962117.854219.13716.7539
ROORoots from the seedlings (10 cm shoot stage)14.047414.431612.077815.8593
NODDeveloping tillers at six leaf stage, 3rd internode4.868927.919739.3933226.2741
CAR5Developing grain, bracts removed (5 DPA)22.576821.83522.255619.1144
CAR15Developing grain, bracts removed (15 DPA)7.489066.450415.7918314.1167



CDS Structure of MLOC_6452






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6452.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6452.2CUST_12950_PI427708083AvailableAvailablecontig_137574 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g06200.1 -2 7e-37 142 72/92 (78%) 13108.m00621 protein stomatin-like protein 2, putative, expressed
TAIR PP10 AT5G54100.1 -2 4e-27 113 56/89 (63%) SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:21954035-21956500 REVERSE LENGTH=401