MLOC_6442 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.136612.883632.209852.52195
LEAShoots from the seedlings (10 cm shoot stage)1.352770.847862.805741.35949
INF1Young developing inflorescences (5mm)2.130642.551542.5252.07883
INF2Developing inflorescences (1-1.5 cm)2.391512.295872.533652.72493
ROORoots from the seedlings (10 cm shoot stage)1.821471.787641.677212.06296
NODDeveloping tillers at six leaf stage, 3rd internode1.163761.113541.227733.03576
CAR5Developing grain, bracts removed (5 DPA)1.834812.576631.98342.2132
CAR15Developing grain, bracts removed (15 DPA)0.9807520.78830.870472.09972



CDS Structure of MLOC_6442






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6442.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6442.2CUST_14686_PI427708080AvailableAvailablecontig_137560 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g37430.2 -1 0.0 569 289/381 (76%) 13106.m03873 protein expressed protein
TAIR PP10 AT2G45320.1 -1 7e-139 421 217/342 (63%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18684182-18686107 REVERSE LENGTH=392