MLOC_64400 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.207524.29118.949221.8869
LEAShoots from the seedlings (10 cm shoot stage)6.2130.5534980.5785032.06049
INF1Young developing inflorescences (5mm)76.027473.025763.941965.4557
INF2Developing inflorescences (1-1.5 cm)78.7886113.93589.6796113.349
ROORoots from the seedlings (10 cm shoot stage)14.389520.019417.565622.4483
NODDeveloping tillers at six leaf stage, 3rd internode0.2346660.1127540.03206160.258733
CAR5Developing grain, bracts removed (5 DPA)27.499322.924419.315524.1605
CAR15Developing grain, bracts removed (15 DPA)2.559031.180043.411095.65539



CDS Structure of MLOC_64400






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64400.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374771NoneNoneNoneNone
MLOC_64400.1CUST_4965_PI427708080AvailableAvailablecontig_48772 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g38570.1 +3 0.0 2080 1158/1230 (94%) 13104.m03704 protein multidrug resistance protein, putative, expressed
TAIR PP10 AT3G28860.1 +3 0.0 1852 1019/1229 (83%) | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252