MLOC_6434 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.1652270.09049
LEAShoots from the seedlings (10 cm shoot stage)000.175280.134372
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)1.29381.371120.710251.03797
CAR15Developing grain, bracts removed (15 DPA)00.22932900.509109



CDS Structure of MLOC_6434






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6434.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6434.1CUST_8706_PI427708083AvailableAvailablecontig_137542 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g07960.1 -3 3e-21 90 51/99 (52%) 13103.m00892 protein expressed protein
TAIR PP10 AT2G26340.1 -3 2e-11 61 36/95 (38%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11215254-11216480 FORWARD LENGTH=253