MLOC_64213 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.693917.835921.017814.5962
LEAShoots from the seedlings (10 cm shoot stage)32.942436.190336.635625.1383
INF1Young developing inflorescences (5mm)2.068232.426322.695541.55659
INF2Developing inflorescences (1-1.5 cm)3.494043.20794.652463.20047
ROORoots from the seedlings (10 cm shoot stage)38.083730.069537.55231.1233
NODDeveloping tillers at six leaf stage, 3rd internode72.147551.199441.1623139.734
CAR5Developing grain, bracts removed (5 DPA)8.987099.4222810.27657.23132
CAR15Developing grain, bracts removed (15 DPA)1.705791.839541.85433.15769



CDS Structure of MLOC_64213






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64213.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252398.1NoneNoneNoneNone
MLOC_64213.4CUST_4935_PI427708080AvailableAvailablecontig_48503 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g04910.1 +2 1e-126 384 188/248 (76%) 13107.m00436 protein reticulon domain containing protein, putative, expressed
TAIR PP10 AT3G10260.2 +2 3e-72 239 118/249 (47%) Reticulon family protein | chr3:3171413-3172508 REVERSE LENGTH=247