MLOC_64157 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5795710.4210180.5755330.575882
LEAShoots from the seedlings (10 cm shoot stage)0.7246350.2457270.4136660.424611
INF1Young developing inflorescences (5mm)9.487648.3393910.16968.70598
INF2Developing inflorescences (1-1.5 cm)22.283418.438217.956123.7096
ROORoots from the seedlings (10 cm shoot stage)0.5164590.3917520.980310.652876
NODDeveloping tillers at six leaf stage, 3rd internode0.104760.06060130.008352920.173919
CAR5Developing grain, bracts removed (5 DPA)14.766913.724911.758614.766
CAR15Developing grain, bracts removed (15 DPA)0.1394430.05169990.1383090.282206



CDS Structure of MLOC_64157






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64157.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250905.1NoneNoneNoneNone
MLOC_64157.2CUST_4925_PI427708080AvailableAvailablecontig_48435 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g54170.1 -1 6e-113 339 182/247 (74%) 13103.m05935 protein OsMADS34 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT5G15800.1 -1 6e-66 217 116/221 (52%) | Symbols: SEP1, AGL2 | K-box region and MADS-box transcription factor family protein | chr5:5151594-5153767 REVERSE LENGTH=251