MLOC_64045 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.124362.04072.511572.27284
LEAShoots from the seedlings (10 cm shoot stage)1.780311.851841.450591.31682
INF1Young developing inflorescences (5mm)2.266852.080821.802181.63811
INF2Developing inflorescences (1-1.5 cm)3.0122.129762.778042.75418
ROORoots from the seedlings (10 cm shoot stage)2.79832.259523.428222.78211
NODDeveloping tillers at six leaf stage, 3rd internode1.083841.590381.420585.03286
CAR5Developing grain, bracts removed (5 DPA)6.061556.01825.426455.38131
CAR15Developing grain, bracts removed (15 DPA)2.318272.92232.445855.80386



CDS Structure of MLOC_64045






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_64045.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372544NoneNoneNoneNone
MLOC_64045.1CUST_4904_PI427708080AvailableAvailablecontig_48303 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g20720.1 -1 4e-122 370 196/376 (52%) 13102.m02319 protein MBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain
TAIR PP10 AT3G06190.1 -1 8e-73 241 141/357 (39%) | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2 | chr3:1874577-1876575 REVERSE LENGTH=406