MLOC_63989 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.876194.896074.741225.54879
LEAShoots from the seedlings (10 cm shoot stage)3.208191.211051.699451.59962
INF1Young developing inflorescences (5mm)10.84788.6707510.38359.45612
INF2Developing inflorescences (1-1.5 cm)5.2166.420427.508447.88123
ROORoots from the seedlings (10 cm shoot stage)1.331643.011464.075493.48182
NODDeveloping tillers at six leaf stage, 3rd internode0.08098610.08218340.08413530.213538
CAR5Developing grain, bracts removed (5 DPA)5.494874.738414.376515.34919
CAR15Developing grain, bracts removed (15 DPA)0.1036890.1115790.278060.438143



CDS Structure of MLOC_63989






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63989.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358289NoneNoneNoneNone
MLOC_63989.1CUST_4896_PI427708080AvailableAvailablecontig_48246 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g57190.1 -3 4e-99 311 196/346 (57%) 13103.m06269 protein TCP family transcription factor, putative, expressed
TAIR PP10 AT4G18390.2 -3 6e-30 122 63/90 (70%) | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 | chr4:10163212-10164309 REVERSE LENGTH=365