MLOC_63940 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.216072.368742.445052.28962
LEAShoots from the seedlings (10 cm shoot stage)3.16120.7664531.694591.54422
INF1Young developing inflorescences (5mm)1.019461.104271.306951.01481
INF2Developing inflorescences (1-1.5 cm)1.128071.336281.477421.45377
ROORoots from the seedlings (10 cm shoot stage)3.227012.45683.642513.00736
NODDeveloping tillers at six leaf stage, 3rd internode5.454566.374317.6366418.5831
CAR5Developing grain, bracts removed (5 DPA)3.191512.963762.466832.85744
CAR15Developing grain, bracts removed (15 DPA)0.5115280.4592290.3988881.16143



CDS Structure of MLOC_63940






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63940.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359867NoneNoneNoneNone
MLOC_63940.2CUST_4888_PI427708080AvailableAvailablecontig_48168 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g16950.1 -3 4e-69 233 155/276 (56%) 13101.m01899 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT5G56340.1 -3 3e-39 150 66/107 (62%) | Symbols: ATCRT1 | RING/U-box superfamily protein | chr5:22818254-22819444 FORWARD LENGTH=396