MLOC_63916 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains37.126833.28638.262532.5777
LEAShoots from the seedlings (10 cm shoot stage)39.205858.356841.545134.7832
INF1Young developing inflorescences (5mm)12.126611.609113.569.07546
INF2Developing inflorescences (1-1.5 cm)10.266512.581412.680311.3315
ROORoots from the seedlings (10 cm shoot stage)36.817246.654446.295347.4075
NODDeveloping tillers at six leaf stage, 3rd internode39.580134.666740.594299.4001
CAR5Developing grain, bracts removed (5 DPA)26.095226.979830.127223.0823
CAR15Developing grain, bracts removed (15 DPA)5.238354.609416.109810.4579



CDS Structure of MLOC_63916






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63916.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362724NoneNoneNoneNone
MLOC_63916.1CUST_18286_PI427708080AvailableAvailablecontig_48121 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g24550.6 +1 0.0 575 257/318 (81%) 13105.m02508 protein Papain family cysteine protease domain containing protein, expressed
TAIR PP10 AT1G02305.1 +1 3e-166 504 225/303 (74%) Cysteine proteinases superfamily protein | chr1:455816-457974 FORWARD LENGTH=362