MLOC_63880 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.496917.843728.400578.08634
LEAShoots from the seedlings (10 cm shoot stage)13.009110.322611.1289.90993
INF1Young developing inflorescences (5mm)4.487815.487265.93194.38261
INF2Developing inflorescences (1-1.5 cm)5.311855.48075.912536.07817
ROORoots from the seedlings (10 cm shoot stage)19.411912.990913.088416.8156
NODDeveloping tillers at six leaf stage, 3rd internode21.907725.359416.892973.0375
CAR5Developing grain, bracts removed (5 DPA)8.97318.144598.577228.30802
CAR15Developing grain, bracts removed (15 DPA)4.016884.171643.909039.25862



CDS Structure of MLOC_63880






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63880.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370812NoneNoneNoneNone
MLOC_63880.1CUST_4877_PI427708080AvailableAvailablecontig_48072 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g55640.2 +3 1e-72 199 179/326 (55%) 13103.m06056 protein OsSigP2 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
TAIR PP10 AT2G30440.1 +3 3e-30 73 32/58 (55%) | Symbols: TPP | thylakoid processing peptide | chr2:12973244-12975027 FORWARD LENGTH=340