MLOC_63808 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.216526.981146.81037.2697
LEAShoots from the seedlings (10 cm shoot stage)46.07666.837963.97448.6405
INF1Young developing inflorescences (5mm)6.387176.277596.607875.64786
INF2Developing inflorescences (1-1.5 cm)4.060653.986783.961994.54902
ROORoots from the seedlings (10 cm shoot stage)0.7961391.204722.924351.71793
NODDeveloping tillers at six leaf stage, 3rd internode29.508823.792328.093379.4667
CAR5Developing grain, bracts removed (5 DPA)14.44516.78917.730717.011
CAR15Developing grain, bracts removed (15 DPA)5.436134.42424.527711.7293



CDS Structure of MLOC_63808






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63808.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251154.1NoneNoneNoneNone
MLOC_63808.1CUST_4863_PI427708080AvailableAvailablecontig_47986 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g01302.1 +3 1e-133 389 200/239 (84%) 13101.m00042 protein shikimate kinase, putative, expressed
TAIR PP10 AT3G26900.3 +3 2e-46 163 92/251 (37%) | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | chr3:9912314-9914424 REVERSE LENGTH=280