MLOC_6378 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 27.1891 | 21.7011 | 19.3846 | 20.7615 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 11.3223 | 11.7026 | 11.4549 | 8.36827 |
| INF1 | Young developing inflorescences (5mm) | 34.265 | 38.6665 | 37.2186 | 31.2935 |
| INF2 | Developing inflorescences (1-1.5 cm) | 30.8671 | 34.309 | 27.9788 | 34.7633 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 27.903 | 20.1098 | 18.8367 | 20.5395 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 2.29571 | 3.61569 | 10.6908 | 13.3971 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 20.8237 | 26.2354 | 24.5954 | 23.422 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 8.60053 | 7.74059 | 7.3463 | 19.3694 |
CDS Structure of MLOC_6378
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_6378.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os07g47420.1 |
-1 |
8e-100 |
300 |
164/183 (90%) |
13107.m05047 protein 60S ribosome subunit biogenesis protein NIP7, putative, expressed |
| TAIR PP10 |
AT4G15770.1 |
-1 |
7e-69 |
219 |
115/182 (63%) |
RNA binding | chr4:8978060-8978623 FORWARD LENGTH=187 |
