MLOC_63687 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains52.073751.65858.187351.7679
LEAShoots from the seedlings (10 cm shoot stage)27.440610.807612.424413.2254
INF1Young developing inflorescences (5mm)6.1335.682376.536285.29557
INF2Developing inflorescences (1-1.5 cm)2.295842.968514.815713.61627
ROORoots from the seedlings (10 cm shoot stage)50.33940.354637.177644.0912
NODDeveloping tillers at six leaf stage, 3rd internode186.588116.726175.861314.805
CAR5Developing grain, bracts removed (5 DPA)22.024924.497822.25423.3031
CAR15Developing grain, bracts removed (15 DPA)3.508343.327152.86828.46448



CDS Structure of MLOC_63687






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63687.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_63687.1CUST_12928_PI427708083AvailableAvailablecontig_47859 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g39850.1 +3 3e-63 215 119/144 (83%) 13102.m04425 protein transferase family protein, putative, expressed
TAIR PP10 AT5G48930.1 +3 2e-47 171 91/143 (64%) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433