MLOC_63612 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.864783.516093.442663.36271
LEAShoots from the seedlings (10 cm shoot stage)4.878694.669793.64873.8344
INF1Young developing inflorescences (5mm)4.753125.593225.784014.44671
INF2Developing inflorescences (1-1.5 cm)8.576175.604467.345987.64662
ROORoots from the seedlings (10 cm shoot stage)4.003744.967164.470965.96647
NODDeveloping tillers at six leaf stage, 3rd internode4.852797.671338.9045227.1091
CAR5Developing grain, bracts removed (5 DPA)3.94394.267554.014863.99401
CAR15Developing grain, bracts removed (15 DPA)2.966522.444922.287225.97053



CDS Structure of MLOC_63612






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63612.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368451NoneNoneNoneNone
MLOC_63612.2CUST_374_PI427708083AvailableAvailablecontig_47762 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g41210.2 -2 1e-24 101 51/77 (66%) 13108.m04418 protein expressed protein
TAIR PP10 AT1G15780.1 -2 5e-14 74 38/70 (54%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). | chr1:5430446-5435921 REVERSE LENGTH=1335