MLOC_63569 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains167.058172.26162.61178.247
LEAShoots from the seedlings (10 cm shoot stage)86.460918.776228.842434.6247
INF1Young developing inflorescences (5mm)313.782267.228228.879254.989
INF2Developing inflorescences (1-1.5 cm)212.396282.256282.069326.923
ROORoots from the seedlings (10 cm shoot stage)71.0828107.389109.737121.143
NODDeveloping tillers at six leaf stage, 3rd internode13.655335.860712.195176.4924
CAR5Developing grain, bracts removed (5 DPA)192.39182.692155.656197.422
CAR15Developing grain, bracts removed (15 DPA)22.51712.83123.385650.2303



CDS Structure of MLOC_63569






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63569.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_63569.1CUST_14578_PI427708080AvailableAvailablecontig_47718 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g58470.1 -2 2e-22 94 47/59 (80%) 13103.m06419 protein retrotransposon protein, putative, Ty3-gypsy subclass, expressed
TAIR PP10 AT2G30620.2 -2 4e-14 68 35/59 (59%) winged-helix DNA-binding transcription factor family protein | chr2:13045360-13046267 FORWARD LENGTH=202