MLOC_63540 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.52630.138226.675326.6136
LEAShoots from the seedlings (10 cm shoot stage)25.397726.814723.00822.1643
INF1Young developing inflorescences (5mm)58.440152.937446.82944.6804
INF2Developing inflorescences (1-1.5 cm)40.538142.585439.246344.704
ROORoots from the seedlings (10 cm shoot stage)9.3600621.994418.855825.2187
NODDeveloping tillers at six leaf stage, 3rd internode6.801066.2228810.400824.4523
CAR5Developing grain, bracts removed (5 DPA)27.504726.875827.415526.4748
CAR15Developing grain, bracts removed (15 DPA)11.12798.552818.9606222.1469



CDS Structure of MLOC_63540






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63540.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375879NoneNoneNoneNone
MLOC_63540.1CUST_4804_PI427708080AvailableAvailablecontig_47687 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g29630.1 -1 0.0 1394 687/871 (79%) 13109.m02938 protein NOL1/NOP2/sun family protein, putative, expressed
TAIR PP10 AT2G22400.1 -1 0.0 842 459/852 (54%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:9504823-9508788 REVERSE LENGTH=808