MLOC_63532 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.141387000.123278
LEAShoots from the seedlings (10 cm shoot stage)0.3499430.2948670.1355370.226508
INF1Young developing inflorescences (5mm)0.3205480.6005541.042470.616201
INF2Developing inflorescences (1-1.5 cm)3.21991.009812.221082.36241
ROORoots from the seedlings (10 cm shoot stage)0.4479020.5912540.3055580.657772
NODDeveloping tillers at six leaf stage, 3rd internode0.1077760.3332350.1826190.941619
CAR5Developing grain, bracts removed (5 DPA)0.334290.3602250.4660660.408788
CAR15Developing grain, bracts removed (15 DPA)2.686552.173842.687986.33681



CDS Structure of MLOC_63532






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63532.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353849NoneNoneNoneNone
MLOC_63532.1CUST_4803_PI427708080AvailableAvailablecontig_47673 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g53220.1 -3 1e-93 291 187/252 (74%) 13101.m05575 protein HSF-type DNA-binding domain containing protein, expressed
TAIR PP10 AT3G24520.1 -3 2e-48 173 87/182 (48%) | Symbols: AT-HSFC1, HSFC1 | heat shock transcription factor C1 | chr3:8941455-8942531 FORWARD LENGTH=330