MLOC_63525 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.601911.14729.1441611.658
LEAShoots from the seedlings (10 cm shoot stage)19.930515.947612.479413.2666
INF1Young developing inflorescences (5mm)33.039242.41877.903948.7234
INF2Developing inflorescences (1-1.5 cm)114.10497.2501102.238124.42
ROORoots from the seedlings (10 cm shoot stage)39.325724.126719.164430.1266
NODDeveloping tillers at six leaf stage, 3rd internode36.315245.02251.9508135.928
CAR5Developing grain, bracts removed (5 DPA)2.32731.83192.423252.3589
CAR15Developing grain, bracts removed (15 DPA)5.46563.81773.8337311.4728



CDS Structure of MLOC_63525






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63525.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357110NoneNoneNoneNone
MLOC_63525.2CUST_18277_PI427708080AvailableAvailablecontig_47626 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g09620.2 -1 5e-168 494 293/390 (75%) 13101.m01029 protein zinc finger/CCCH transcription factor, putative, expressed
TAIR PP10 AT2G19810.1 -1 3e-80 264 183/385 (48%) CCCH-type zinc finger family protein | chr2:8550419-8551498 FORWARD LENGTH=359